diff --git a/api/tests/unit/util/mappers/test_unit_mappers_engine.py b/api/tests/unit/util/mappers/test_unit_mappers_engine.py
index e70b85ab63b7..6e08270cbbf5 100644
--- a/api/tests/unit/util/mappers/test_unit_mappers_engine.py
+++ b/api/tests/unit/util/mappers/test_unit_mappers_engine.py
@@ -33,6 +33,7 @@
 
 from environments.models import Environment
 from features.models import FeatureSegment, FeatureState
+from features.versioning.models import EnvironmentFeatureVersion
 from features.versioning.tasks import enable_v2_versioning
 from integrations.common.models import IntegrationsModel
 from integrations.dynatrace.models import DynatraceConfiguration
@@ -40,6 +41,7 @@
 from integrations.segment.models import SegmentConfiguration
 from integrations.webhook.models import WebhookConfiguration
 from segments.models import Segment, SegmentRule
+from users.models import FFAdminUser
 from util.mappers import engine
 
 if TYPE_CHECKING:
@@ -598,3 +600,59 @@ def test_map_environment_to_engine_following_migration_to_v2_versioning(
     assert mapped_segment_override.django_id == v2_segment_override.id
     assert mapped_segment_override.enabled is True
     assert mapped_segment_override.feature_state_value == v2_segment_override_value
+
+
+def test_map_environment_to_engine_v2_versioning_segment_overrides(
+    environment_v2_versioning: Environment,
+    segment: Segment,
+    feature: "Feature",
+    staff_user: FFAdminUser,
+) -> None:
+    # Given
+    # Another segment
+    another_segment = Segment.objects.create(
+        name="another_segment", project=feature.project
+    )
+
+    # First, let's create a version that includes 2 segment overrides
+    v2 = EnvironmentFeatureVersion.objects.create(
+        feature=feature, environment=environment_v2_versioning
+    )
+    for _segment in [segment, another_segment]:
+        FeatureState.objects.create(
+            feature=feature,
+            environment=environment_v2_versioning,
+            environment_feature_version=v2,
+            feature_segment=FeatureSegment.objects.create(
+                feature=feature,
+                segment=_segment,
+                environment=environment_v2_versioning,
+                environment_feature_version=v2,
+            ),
+        )
+    v2.publish(staff_user)
+
+    # Now, let's create another new version which will keep one of the segment overrides
+    # and remove the other.
+    v3 = EnvironmentFeatureVersion.objects.create(
+        feature=feature, environment=environment_v2_versioning
+    )
+
+    v3_segment_override = FeatureState.objects.get(
+        feature_segment__segment=segment, environment_feature_version=v3
+    )
+    FeatureState.objects.filter(
+        feature_segment__segment=another_segment, environment_feature_version=v3
+    ).delete()
+
+    v3.publish(staff_user)
+
+    # When
+    environment_model = engine.map_environment_to_engine(environment_v2_versioning)
+
+    # Then
+    assert len(environment_model.project.segments[0].feature_states) == 1
+    assert (
+        environment_model.project.segments[0].feature_states[0].django_id
+        == v3_segment_override.id
+    )
diff --git a/api/util/mappers/engine.py b/api/util/mappers/engine.py
index 243b1fff6eec..e5e8c733ceef 100644
--- a/api/util/mappers/engine.py
+++ b/api/util/mappers/engine.py
@@ -1,6 +1,7 @@
 from collections.abc import Iterable
 from itertools import chain
 from typing import TYPE_CHECKING, Dict, List, Optional
+from uuid import UUID
 
 from flag_engine.environments.integrations.models import IntegrationModel
 from flag_engine.environments.models import (
@@ -25,6 +26,7 @@
 )
 
 from environments.constants import IDENTITY_INTEGRATIONS_RELATION_NAMES
+from features.versioning.models import EnvironmentFeatureVersion
 
 if TYPE_CHECKING:  # pragma: no cover
     from environments.identities.models import Identity, Trait
@@ -200,6 +202,16 @@ def map_environment_to_engine(
     project_segment_feature_states_by_segment_id = _get_segment_feature_states(
         project_segments,
         environment.pk,
+        latest_environment_feature_version_uuids=(
+            {
+                efv.uuid
+                for efv in EnvironmentFeatureVersion.objects.get_latest_versions(
+                    environment
+                )
+            }
+            if environment.use_v2_feature_versioning
+            else []
+        ),
     )
     environment_feature_states: List["FeatureState"] = _get_prioritised_feature_states(
         [
@@ -419,14 +431,26 @@ def _get_prioritised_feature_states(
 def _get_segment_feature_states(
     segments: Iterable["Segment"],
     environment_id: int,
+    latest_environment_feature_version_uuids: Iterable[UUID],
 ) -> Dict[int, List["FeatureState"]]:
     feature_states_by_segment_id = {}
+
     for segment in segments:
         segment_feature_states = feature_states_by_segment_id.setdefault(segment.pk, [])
+
         for feature_segment in segment.feature_segments.all():
             if feature_segment.environment_id != environment_id:
                 continue
+
+            if (
+                latest_environment_feature_version_uuids
+                and feature_segment.environment_feature_version_id
+                not in latest_environment_feature_version_uuids
+            ):
+                continue
+
             segment_feature_states += _get_prioritised_feature_states(
                 feature_segment.feature_states.all()
             )
+
     return feature_states_by_segment_id